The impact of chlorophyll on the southwest monsoon is unknown. Here, seasonally varying chlorophyll in the Bay of Bengal was imposed in a general circulation model coupled to an ocean mixed layer model. The SST increases by 0.5 °C in response to chlorophyll forcing and shallow mixed layer depths in coastal regions during the inter-monsoon. Precipitation increases significantly to 3 mm d^-1 across Myanmar during June and over northeast India and Bangladesh during October, decreasing model bias.